metahdep

The metahdep package is a tool for combining the results of multiple gene expression studies, and it accounts for sampling and hierarchical dependence among studies as well as covariate differences between studies.

Topic

Gene expression;Data architecture, analysis and design

Detail

  • Operation: Gene expression analysis

  • Software interface: Command-line user interface;Library

  • Language: R

  • License: GNU General Public License, version 2

  • Cost: Free

  • Version name: 1.56.0

  • Credit: Utah State University New Faculty Research Grant.

  • Input: -

  • Output: -

  • Contact: John R. Stevens john.r.stevens@usu.edu

  • Collection: -

  • Maturity: Stable

Publications

  • metahdep: meta-analysis of hierarchically dependent gene expression studies.
  • Stevens JR and Nicholas G. metahdep: meta-analysis of hierarchically dependent gene expression studies. metahdep: meta-analysis of hierarchically dependent gene expression studies. 2009; 25:2619-20. doi: 10.1093/bioinformatics/btp468
  • https://doi.org/10.1093/bioinformatics/btp468
  • PMID: 19648140
  • PMC: -

Download and documentation

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