mspire
The 'mspire' software library offers efficient reading and processing of large, complex datasets from mass spectrometry-based proteomics using the Ruby programming language. It provides readers for standard xml proteomics formats, converters for intermediate file types, and modules for calculating peptide false identification rates.
Topic
Proteomics;Proteomics experiment;Data mining
Detail
Operation: Data handling
Software interface: Command-line user interface
Language: Ruby
License: The MIT License
Cost: Free
Version name: -
Credit: National Science Foundation, the National Institutes of Health, the Welch Foundation, Packard Fellowship. NIH.
Input: -
Output: -
Contact: marcotte@icmb.utexas.edu
Collection: -
Maturity: -
Publications
- mspire: mass spectrometry proteomics in Ruby.
- Prince JT and Marcotte EM. mspire: mass spectrometry proteomics in Ruby. mspire: mass spectrometry proteomics in Ruby. 2008; 24:2796-7. doi: 10.1093/bioinformatics/btn513
- https://doi.org/10.1093/bioinformatics/btn513
- PMID: 18930952
- PMC: PMC2639276
Download and documentation
Documentation: https://github.com/princelab/mspire#readme
Home page: https://github.com/princelab/mspire
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