nucleR

nucleR is an R/Bioconductor package that enables quick and flexible identification of nucleosome positioning from next-generation sequencing and tiling array experiments. The software can be easily integrated with standard high-throughput genomics R packages and supports in situ visualization, as well as exporting results to common genome browser formats.

Topic

DNA packaging;Nucleic acid sites, features and motifs;Sequencing

Detail

  • Operation: Nucleic acid feature detection

  • Software interface: Command-line user interface;Library

  • Language: R

  • License: GNU Lesser General Public License v3.0

  • Cost: Free

  • Version name: 2.30.0

  • Credit: Spanish Ministry of Science and Innovation, Instituto de Salud Carlos III (INB-Genoma Espa ña and COMBIOMED RETICS), Fundación Marcelino Botín.

  • Input: -

  • Output: -

  • Contact: Alba Sala alba.sala@irbbarcelona.org

  • Collection: -

  • Maturity: Mature

Publications

  • nucleR: a package for non-parametric nucleosome positioning.
  • Flores O and Orozco M. nucleR: a package for non-parametric nucleosome positioning. nucleR: a package for non-parametric nucleosome positioning. 2011; 27:2149-50. doi: 10.1093/bioinformatics/btr345
  • https://doi.org/10.1093/bioinformatics/btr345
  • PMID: 21653521
  • PMC: -

Download and documentation

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