pSumo-CD

pSumo-CD is a predictor for identifying sumoylation sites in proteins. The predictor incorporates sequence-coupled effects into general pseudo-amino acid composition (PseAAC) and uses the covariance discriminant (CD) algorithm with a bias-adjustment term.

Topic

Protein sites, features and motifs;Protein structure analysis;Sequence analysis

Detail

  • Operation: Protein feature detection

  • Software interface: Web user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: The National Nature Science Foundation of China, the Natural Science Foundation of Jiangxi Province and China.

  • Input: -

  • Output: -

  • Contact: Jianhua Jia jjia@gordonlifescience.org, Xuan Xiao xxiao@gordonlifescience.org, Kuo-Chen Chou kcchou@gordonlifescience.org

  • Collection: -

  • Maturity: -

Publications

  • pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC.
  • Jia J, et al. pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC. pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC. 2016; 32:3133-3141. doi: 10.1093/bioinformatics/btw387
  • https://doi.org/10.1093/BIOINFORMATICS/BTW387
  • PMID: 27354696
  • PMC: -

Download and documentation

    Currently not available or not maintained.

< Back to DB search