pathview

Pathview is a toolset for pathway-based data integration and visualization. It streamlines the process of mapping and rendering user data onto relevant pathway graphs. Users provide their data and specify the target pathway. Pathview automates the download of pathway graph data, parsing the file, mapping and integrating user data onto the pathway and rendering pathway graphs with the mapped data. While functioning as a stand-alone program, Pathview integrates with pathway and functional analysis tools, making it suitable for large-scale and fully automated analysis pipelines.