pegas

The software tool 'pegas' is a package for the analysis of population genetic data. It is integrated with other R packages (ape and adegenet) and provides standard population genetic methods as well as low-level functions for developing new methods. pegas uses the graphical capabilities of R for plotting haplotype networks and other functionalities. It emphasizes the need for an integrated-modular approach for software dedicated to the analysis of population genetic data.

Topic

Population genetics analysis

Detail

  • Operation: population genetics analysis;haplotype network visualization

  • Software interface: -

  • Language: R

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: IRD program ‘Spirales’, and European Science Foundation (ESF) through the MolArch (Molecular Archives of Past Climatic Changes) project.

  • Input: -

  • Output: -

  • Contact: emmanuel.paradis@ird.fr

  • Collection: -

  • Maturity: Stable

Publications

  • pegas: an R package for population genetics with an integrated-modular approach.
  • Paradis E. pegas: an R package for population genetics with an integrated-modular approach. pegas: an R package for population genetics with an integrated-modular approach. 2010; 26:419-20. doi: 10.1093/bioinformatics/btp696
  • https://doi.org/10.1093/bioinformatics/btp696
  • PMID: 20080509
  • PMC: -

Download and documentation

    Currently not available or not maintained.

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