phylotaR

An automated pipeline for retrieving orthologous DNA sequences from GenBank in R.

Topic

Data acquisition;DNA;Taxonomy

Detail

  • Operation: Data retrieval

  • Software interface: Library

  • Language: R

  • License: The MIT licence

  • Cost: Free

  • Version name: -

  • Credit: We would like to thank ROpenSci for their feedback and support regarding the development of the phylotaR package. D.S. received funding from the Swedish Research Council (2015-04748). A.A. is supported by the Swedish Research Council (B0569601), the Swedish Foundation for Strategic Research, a Wallenberg Academy Fellowship, the Faculty of Sciences at the University of Gothenburg, the Wenner-Gren Foundations, and the David Rockefeller Center for Latin American Studies at Harvard University.

  • Input: -

  • Output: -

  • Contact: dominic.john.bennett@gmail.com

  • Collection: -

  • Maturity: -

Publications

  • phylotaR: An Automated Pipeline for Retrieving Orthologous DNA Sequences from GenBank in R.
  • Bennett DJ, et al. phylotaR: An Automated Pipeline for Retrieving Orthologous DNA Sequences from GenBank in R. phylotaR: An Automated Pipeline for Retrieving Orthologous DNA Sequences from GenBank in R. 2018; 8:(unknown pages). doi: 10.3390/life8020020
  • https://doi.org/10.3390/life8020020
  • PMID: 29874797
  • PMC: PMC6027284

Download and documentation

< Back to DB search