ppiPre

ppiPre is an R tool for predicting protein-protein interactions (PPIs). The ppiPre algorithm uses a combination of heterogeneous features, such as GO-based semantic similarities, KEGG-based co-pathway similarity, and topology-based similarities.

Topic

Systems biology;Protein interactions;Molecular interactions, pathways and networks

Detail

  • Operation: Protein interaction prediction

  • Software interface: Library

  • Language: R

  • License: Library

  • Cost: Free

  • Version name: 1.9

  • Credit: NSFC, the Fundamental Research Funds for the Central Universities.

  • Input: -

  • Output: -

  • Contact: Yue Deng, Lin Gao lgao@mail.xidian.edu.cn

  • Collection: -

  • Maturity: -

Publications

  • ppiPre: predicting protein-protein interactions by combining heterogeneous features.
  • Deng Y, Gao L, Wang B. ppiPre: predicting protein-protein interactions by combining heterogeneous features. BMC Syst Biol. 2013;7 Suppl 2(Suppl 2):S8. doi: 10.1186/1752-0509-7-S2-S8. Epub 2013 Oct 14. Erratum in: BMC Syst Biol. 2015;9:50. PMID: 24565177; PMCID: PMC3851814.
  • https://doi.org/10.1186/1752-0509-7-S2-S8
  • PMID: 24565177
  • PMC: PMC3851814
  • Erratum to: ppiPre: predicting protein-protein interactions by combining heterogeneous features
  • Deng Y, Gao L, Wang B. Erratum to: ppiPre: predicting protein-protein interactions by combining heterogeneous features. BMC Syst Biol. 2015 Aug 29;9:50. doi: 10.1186/s12918-015-0196-5. Erratum for: BMC Syst Biol. 2013;7 Suppl 2:S8. PMID: 26319399; PMCID: PMC4553018.
  • https://doi.org/10.1186/s12918-015-0196-5
  • PMID: 26319399
  • PMC: PMC4553018

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