rScudo

"rScudo" is an R package for classifying biological samples based on their molecular profiles. It introduces a novel approach centered around the analysis of rank-based sample-specific signatures. The package's unconventional method has been validated through comparison with existing methods in the SBV IMPROVER Diagnostic Signature Challenge. "rScudo" is versatile, allowing experimentation with the rank-based signature approach across different molecular profile types and facilitating comparisons with established methods.

Topic

Gene expression;Proteomics;Personalised medicine

Detail

  • Operation: Expression profile clustering;Feature extraction;Validation

  • Software interface: Command-line user interface

  • Language: R

  • License: The GNU General Public License v3.0

  • Cost: Free

  • Version name: 1.18.0

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Matteo Ciciani matteo.ciciani@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • rScudo: an R package for classification of molecular profiles using rank-based signatures.
  • Ciciani M, et al. rScudo: an R package for classification of molecular profiles using rank-based signatures. rScudo: an R package for classification of molecular profiles using rank-based signatures. 2020; 36:4095-4096. doi: 10.1093/bioinformatics/btaa296
  • https://doi.org/10.1093/BIOINFORMATICS/BTAA296
  • PMID: 32399554
  • PMC: -

Download and documentation


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