rnaseqcomp

The software tool "rnaseqcomp" addresses the challenge of evaluating the performance of competing algorithms for RNA-seq data analysis. The complexity of the data analytical process and the multitude of available algorithms make it difficult to determine the best approach. The tool provides a series of statistical summaries and plots for assessing performance regarding specificity and sensitivity.

Topic

RNA-seq

Detail

  • Operation: RNA-Seq quantification

  • Software interface: Command-line user interface,Library

  • Language: R

  • License: The GNU General Public License v3.0

  • Cost: Free

  • Version name: 1.32.0

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Mingxiang Teng tengmx@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • Erratum to: A benchmark for RNA-seq quantification pipelines.
  • Teng M, Love MI, Davis CA, Djebali S, Dobin A, Graveley BR, Li S, Mason CE, Olson S, Pervouchine D, Sloan CA, Wei X, Zhan L, Irizarry RA. A benchmark for RNA-seq quantification pipelines. Genome Biol. 2016 Apr 23;17:74. doi: 10.1186/s13059-016-0940-1. Erratum in: Genome Biol. 2016;17(1):107. Erratum in: Genome Biol. 2016 Sep 30;17 (1):203. PMID: 27107712; PMCID: PMC4842274.
  • https://doi.org/10.1186/s13059-016-0940-1
  • PMID: 27107712
  • PMC: PMC4842274
  • Erratum to: A benchmark for RNA-seq quantification pipelines.
  • Teng M, et al. Erratum to: A benchmark for RNA-seq quantification pipelines. Erratum to: A benchmark for RNA-seq quantification pipelines. 2016; 17:203. doi: 10.1186/s13059-016-1060-7
  • https://doi.org/10.1186/s13059-016-1060-7
  • PMID: 27716375
  • PMC: PMC5045616

Download and documentation

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