supraHex

supraHex is an open-source package designed to address biologists' challenges when analyzing genome-wide omics data, characterized by many genomic coordinates and a relatively small number of samples. This Bioconductor package introduces a supra-hexagonal map as a novel solution for self-organizing input data, offering scalable functionalities for post-analysis and the unique ability to overlay additional data for comprehensive multilayer omics data comparisons.

Topic

Gene expression;Data visualisation;Machine learning

Detail

  • Operation: Clustering;Visualisation

  • Software interface: Command-line user interface,Library

  • Language: R

  • License: GNU General Public License, version 2

  • Cost: Free

  • Version name: 1.40.0

  • Credit: The Biotechnology and Biological Sciences Research Council.

  • Input: -

  • Output: -

  • Contact: Hai Fang hfang@well.ox.ac.uk

  • Collection: -

  • Maturity: Stable

Publications

  • supraHex: an R/Bioconductor package for tabular omics data analysis using a supra-hexagonal map.
  • Fang H and Gough J. supraHex: an R/Bioconductor package for tabular omics data analysis using a supra-hexagonal map. supraHex: an R/Bioconductor package for tabular omics data analysis using a supra-hexagonal map. 2014; 443:285-9. doi: 10.1016/j.bbrc.2013.11.103
  • https://doi.org/10.1016/j.bbrc.2013.11.103
  • PMID: 24309102
  • PMC: PMC3905187

Download and documentation

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