tcsBU

The software tool 'tcsBU' extends the capabilities of TCS, a haplotype network reconstruction software, by allowing users to overlap genetic with geographic structure. The program implements haplotype classification into an arbitrary user-defined scheme, displayed as pie-chart like graphs embedded into the network. tcsBU improves the speed at which the final network layout is reached, and networks can be saved as Scalable Vector Graphics format.

Topic

Genotype and phenotype;Computational biology;Genetics

Detail

  • Operation: Classification

  • Software interface: Web user interface

  • Language: Java

  • License: The MIT License

  • Cost: Free

  • Version name: -

  • Credit: FEDER through the Operational Programme for Competitiveness Factors, the project ‘Biodiversity, Ecology and Global Change’ co-financed by North Portugal Regional Operational Programme, under the National Strategic Reference Framework, by National Funds through Foundation for Science and Technology, FCT grants

  • Input: -

  • Output: -

  • Contact: amsantos@fc.up.pt

  • Collection: -

  • Maturity: -

Publications

  • tcsBU: a tool to extend TCS network layout and visualization.
  • Múrias dos Santos A, et al. tcsBU: a tool to extend TCS network layout and visualization. tcsBU: a tool to extend TCS network layout and visualization. 2016; 32:627-8. doi: 10.1093/bioinformatics/btv636
  • https://doi.org/10.1093/bioinformatics/btv636
  • PMID: 26515821
  • PMC: -

Download and documentation

    Currently not available or not maintained.

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