treeio
treeio is an R tool to import, parse, convert formats, and export phylogenetic trees in standard formats and link external data from various sources.
Topic
Phylogenetics
Detail
Operation: Annotation;Alignment;Clustering;Data handling
Software interface: Library
Language: R
License: The Artistic License 2.0
Cost: Free
Version name: 1.20.1
Credit: National Key Plan for Scientific Research and Development of China, Shenzhen Peacock Plan, National Institutes of Health, NSFC-Guangdong Joint Foundation of China, Open Project of Guangdong Provincial Key Laboratory of Proteomics, Startup fund from Southern Medical University.
Input: -
Output: -
Contact: Guangchuang Yu guangchuangyu@gmail.com
Collection: -
Maturity: Stable
Publications
- Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data.
- Wang LG, Lam TT, Xu S, Dai Z, Zhou L, et al. (2020). Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data. Mol Biol Evol 37(2): 599-603.
- https://doi.org/10.1093/molbev/msz240
- PMID: 31633786
- PMC: PMC6993851
Download and documentation
Source: http://bioconductor.org/packages/release/bioc/src/contrib/treeio_1.20.1.tar.gz
Documentation: http://bioconductor.org/packages/release/bioc/manuals/treeio/man/treeio.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/treeio.html
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