treeio

treeio is an R tool to import, parse, convert formats, and export phylogenetic trees in standard formats and link external data from various sources.

Topic

Phylogenetics

Detail

  • Operation: Annotation;Alignment;Clustering;Data handling

  • Software interface: Library

  • Language: R

  • License: The Artistic License 2.0

  • Cost: Free

  • Version name: 1.20.1

  • Credit: National Key Plan for Scientific Research and Development of China, Shenzhen Peacock Plan, National Institutes of Health, NSFC-Guangdong Joint Foundation of China, Open Project of Guangdong Provincial Key Laboratory of Proteomics, Startup fund from Southern Medical University.

  • Input: -

  • Output: -

  • Contact: Guangchuang Yu guangchuangyu@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data.
  • Wang LG, Lam TT, Xu S, Dai Z, Zhou L, et al. (2020). Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data. Mol Biol Evol 37(2): 599-603.
  • https://doi.org/10.1093/molbev/msz240
  • PMID: 31633786
  • PMC: PMC6993851

Download and documentation


< Back to DB search