trimAl

Tool for the removal of poorly aligned sequences from multiple sequence alignments. It can automatically detect and select various parameters to optimize the signal-to-noise ratio.

Topic

Sequence analysis;Sequencing;Sequence sites, features and motifs

Detail

  • Operation: Multiple sequence alignment;Sequence alignment editing

  • Software interface: Command-line user interface

  • Language: C++

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 1.2b - 1.4b

  • Credit: FIS (06-213 to T.G.) and MEC (GEN2006-27784-E/PAT to T.G.).

  • Input: Phylip, Fasta, Clustal, NBRF/Pir, Mega, Nexus

  • Output: Phylip, Fasta, Clustal, NBRF/Pir, Mega, Nexus, Text

  • Contact: salcagu@gmail.com;tgabaldon@crg.es

  • Collection: -

  • Maturity: Stable

Publications

  • trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.
  • Capella-Gutiérrez S, et al. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. 2009; 25:1972-3. doi: 10.1093/bioinformatics/btp348
  • https://doi.org/10.1093/bioinformatics/btp348
  • PMID: 19505945
  • PMC: PMC2712344

Download and documentation

< Back to DB search