webPRANK

webPRANK is a multiple sequence alignment (MSA) tool for DNA, protein, cDNA, and codon sequences at Goldman Group (EBI). It has structure models built-in and includes a web-based visualization of multiple alignments.

Topic

Phylogeny;Sequence analysis;Nucleic acid sites, features and motifs;Nucleic acid structure analysis;Sequence sites, features and motifs

Detail

  • Operation: Visualization;Multiple sequence alignment

  • Software interface: Web user interface

  • Language: C++

  • License: Other

  • Cost: Free

  • Version name: -

  • Credit: Wellcome Trust [Programme Grant GR078968].

  • Input: FASTA;Newick

  • Output: FASTA

  • Contact: webprank@ebi.ac.uk;ari@ebi.ac.uk;ari.loytynoja@helsinki.fi

  • Collection: EBI Tools

  • Maturity: Stable

Publications

  • webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser.
  • Löytynoja A and Goldman N. webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser. webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser. 2010; 11:579. doi: 10.1186/1471-2105-11-579
  • https://doi.org/10.1186/1471-2105-11-579
  • PMID: 21110866
  • PMC: PMC3009689

Download and documentation

< Back to DB search