xMWAS

xMWAS is a software tool for data integration, network visualization, clustering, and differential network analysis of data from multiple omics platforms and biochemical and phenotypic assays. It allows for the identification of sub-networks or communities of highly connected entities and evaluating the topology of the integrative network under different conditions.

Topic

Omics;Molecular interactions, pathways and networks;Systems biology;Genotype and phenotype;Data visualisation

Detail

  • Operation: Gene expression clustering;Pathway or network analysis;Pathway or network visualisation

  • Software interface: Library;Web application

  • Language: R

  • License: GNU General Public License, version 2

  • Cost: Free

  • Version name: v0.552

  • Credit: National Institutes of Health (USA), the US National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services.

  • Input: -

  • Output: -

  • Contact: kuppal2@emory.edu

  • Collection: -

  • Maturity: -

Publications

  • xMWAS: a data-driven integration and differential network analysis tool.
  • Uppal K, et al. xMWAS: a data-driven integration and differential network analysis tool. xMWAS: a data-driven integration and differential network analysis tool. 2018; 34:701-702. doi: 10.1093/bioinformatics/btx656
  • https://doi.org/10.1093/bioinformatics/btx656
  • PMID: 29069296
  • PMC: PMC5860615

Download and documentation

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