BAliBASE (Benchmark Alignment dataBASE) is a multiple sequence alignment (MSA) benchmarking reference set. It contains reference alignments based on three-dimensional structures and particular reference sets that contain various linear motifs. The AUthors also provide a program that can compare a test alignment with the BAliBASE reference alignment. See also "links" for BAliBASE.


Phylogeny;Sequence analysis;Nucleic acid sites, features and motifs;Nucleic acid structure analysis;Sequence sites, features and motifs


  • Operation: Multiple sequence alignment;Benchmark

  • Software interface: Command-line user interface

  • Language: C

  • License: -

  • Cost: Free

  • Version name: 4

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Julie Thompson | Raymond Ripp

  • Collection: BAliBASE

  • Maturity: -



Download and documentation

< Back to DB search