BAliBASE (Benchmark Alignment dataBASE) is a multiple sequence alignment (MSA) benchmarking reference set. It contains reference alignments based on three-dimensional structures and particular reference sets that contain various linear motifs. The AUthors also provide a program that can compare a test alignment with the BAliBASE reference alignment.
Phylogeny; Sequence analysis; Nucleic acid sites, features and motifs; Nucleic acid structure analysis; Sequence sites, features and motifs
Bahr A, Thompson JD, Thierry JC, Poch O "BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations." Nucleic Acids Res. 2001 Jan 1;29(1):323-6. https://doi.org/10.1093/nar/29.1.323
PMID: 11125126
PMCID: PMC29792
Thompson JD, Koehl P, Ripp R, Poch O "BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark." Proteins. 2005 Oct 1;61(1):127-36. https://doi.org/10.1002/prot.20527
PMID: 16044462
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