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Multiple sequence alignment online
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Free online software
⚬ Number of alignments
between two sequences ⚬ Align 2 sequences ⚬ Make PAM matrices ⚬ Reverse complement DNA sequences ⚬ Create DNA matrices ⚬ Evaluate DNA alignment scoring ⚬ 33 Software Tools To Generate Sequence Logos ⚬ MSAViewer - Multiple Sequence Alignment Viewer ⚬ SNP tools and resources ⚬ MSA tools and resources ⚬ CNV tools and resources ⚬ WGA tools and resources ⚬ Genotype imputation tools and resources ⚬ RNA-seq tools and resources ⚬ Genome-wide association study (GWAS) tools and resources
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Tutorials
⚬ Introduction to sequence comparison ⚬ Pair-wise sequence alignment ⚬ Pair-wise sequence alignment methods ⚬ Construction of substitution matrices ⚬ DNA Sequence Alignment How to ⚬ How to select the right substitution matrix? ⚬ Introduction to Information Theory and Its Applications to DNA and Protein Sequence Alignments ⚬ The Principles of WGS Sequencing and Automated Fragment Assembly ⚬ Whole-genome viral phylogeny estimation without sequence alignment.




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Definition of Bioinformatics

History

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Bioinformatics jobs

News

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⚬ This is what coronavirus does to your body
⚬ Irrational fear of coronavirus triggers toilet paper panic buying
⚬ The Deadliest Infectious Diseases
⚬ Spicy Food may protect you from cerebral infarction and make you live longer
⚬ German economy suffering from a lack of skilled workers
⚬ Degree vs. Skills: Impact on salary
⚬ Career Outlook: Data and Bioinformatics Scientists to 2026
⚬ Infographics: Degree in Bioinformatics (2020)
⚬ Amazing How Only Drop of Information Creates New Life
⚬ How to calculate the weight of information?
⚬ What is genome? ⚬ Coronavirus conspiracies
⚬ Coronavirus conspiracies continue
⚬ What is Wuhan-400 bioweapon?
⚬ Is the eyes of darkness a prophecy?
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ONLINE SOFTWARE

In-house Tools

⚬ Number of alignments
⚬ Align 2 sequences
⚬ Make PAM matrices
⚬ Create DNA matrices
⚬ Evaluate DNA alignment scoring
⚬ 33 Software Tools To Generate Sequence Logos
⚬ MSAViewer - Multiple Sequence Alignment Viewer
⚬ Virus Outbreak Simulator for the US
⚬ Virus Outbreak Simulator for the UK

Tools DB

⚬ Single nucleotide polymorphism (SNP) tools
⚬ Multiple sequence alignment (MSA) tools
⚬ Copy number variation (CNV) tools
⚬ Whole genome assembly (WGA) tools
⚬ Genotype imputation tools
⚬ RNA-seq Analysis Tools
⚬ Genome-wide Association Study (GWAS) Tools
⚬ Proteomics Tools










Multiple sequence alignment online

Press "Start". A sample alignment is loaded. Import your own alignment by pressing "import" button on the menu that will appear.

You may also be interested in the following

Pair-wise sequence alignment

Tutorials Main Page

Multiple alignment tools (MSA) and resources

Related tutorials

Pair-wise sequence alignment
Pair-wise sequence alignment methods
How to select the right substitution matrix?

References

Guy Yachdav, Sebastian Wilzbach, Benedikt Rauscher, Robert Sheridan, Ian Sillitoe, James Procter, Suzanna E. Lewis, Burkhard Rost, Tatyana Goldberg1 (Jul 2016). "MSAViewer: interactive JavaScript visualization of multiple sequence alignments." Bioinformatics. 2016 Nov 15; 32(22): 3501–3503. PMC

IUPAC-IUB Joint Commission on Biochemical Nomenclature. Nomenclature and Symbolism for Amino Acids and Peptides: Recommendations 1983. FEBS J. 1984, 138 (1), 9–37. DOI: 10.1111/j.1432-1033.1984.tb07877.x. HTML version.