CRISPRFinder

CRISPRFinder is a web-based tool for the discovery of CRISPRs, the definition of direct repeats (DR), extraction of spacers, obtaining flanking sequences from the Genbank database, and examine DRs in prokaryotic genomes in general. See also CRISPRcompar

Topic

Model organisms;Transcription factors and regulatory sites;Sequence composition, complexity and repeats;DNA polymorphism;Gene expression

Detail

  • Operation: Repeat sequence detection;Sequence motif recognition;Clustering;Repeat sequence analysis

  • Software interface: Web user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: The CNRS and Université Paris Sud 11, the Délégation Générale pour l’Armement (DGA), ADGE.

  • Input: DNA sequence (FASTA)

  • Output: -

  • Contact: christine.pourcel@u-psud.fr

  • Collection: -

  • Maturity: -

Publications

  • CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.
  • Grissa I, et al. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. 2007; 35:W52-7. doi: 10.1093/nar/gkm360
  • https://doi.org/10.1093/nar/gkm360
  • PMID: 17537822
  • PMC: PMC1933234
  • The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats.
  • Grissa I, Vergnaud G, Pourcel C (2007). The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 8: 172.
  • https://doi.org/10.1186/1471-2105-8-172
  • PMID: 17521438
  • PMC: PMC1892036

Download and documentation

< Back to DB search