DIALIGN

DIALIGN is a multiple sequence alignment (MSA) tool. An improved version is called DIALIGN-TX which in turn is an improvement over DIALIGN-T, that combines greedy, progressive methods. See also 'LINKS'.

Topic

Phylogeny;Sequence analysis;Nucleic acid sites, features and motifs;Nucleic acid structure analysis;Sequence sites, features and motifs

Detail

  • Operation: Multiple sequence alignment

  • Software interface: Web user interface;command-line user interface

  • Language: C

  • License: GNU Lesser General Public License v2

  • Cost: Free

  • Version name: 1.0.2

  • Credit: -

  • Input: FASTA

  • Output: DIALIGN;FASTA

  • Contact: layal@gobics.de | subraman@informatik.uni-tuebingen.de

  • Collection: DIALIGN

  • Maturity: Mature

Publications

  • Multiple DNA and protein sequence alignment based on segment-to-segment comparison.
  • Morgenstern B, et al. Multiple DNA and protein sequence alignment based on segment-to-segment comparison. Multiple DNA and protein sequence alignment based on segment-to-segment comparison. 1996; 93:12098-103. doi: 10.1073/pnas.93.22.12098
  • https://doi.org/10.1073/pnas.93.22.12098
  • PMID: 8901539
  • PMC: PMC37949
  • DIALIGN: finding local similarities by multiple sequence alignment.
  • Morgenstern B, et al. DIALIGN: finding local similarities by multiple sequence alignment. DIALIGN: finding local similarities by multiple sequence alignment. 1998; 14:290-4. doi: 10.1093/bioinformatics/14.3.290
  • https://doi.org/10.1093/bioinformatics/14.3.290
  • PMID: 9614273
  • PMC: -

Download and documentation

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