DIALIGN-TX is the latest version of the DIALIGN multiple sequence alignment (MSA) tool. The main algorithmic addition is the usage of a guide tree.
Phylogeny; Sequence analysis; Nucleic acid sites, features and motifs; Nucleic acid structure analysis; Sequence sites, features and motifs
Subramanian AR, Kaufmann M, Morgenstern B "DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment" Algorithms Mol Biol. 2008 May 27;3:6. doi: 10.1186/1748-7188-3-6. https://doi.org/10.1186/1748-7188-3-6
PMID: 18505568
PMCID: PMC2430965
Subramanian AR, Weyer-Menkhoff J, Kaufmann M, Morgenstern B "DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment." BMC Bioinformatics. 2005 Mar 22;6:66. https://doi.org/10.1186/1471-2105-6-66
PMID: 15784139
PMCID: PMC1087830
Morgenstern B, Dress A, Werner T "Multiple DNA and protein sequence alignment based on segment-to-segment comparison." Proc Natl Acad Sci U S A. 1996 Oct 29;93(22):12098-103. https://doi.org/10.1073/pnas.93.22.12098
PMID: 8901539
PMCID: PMC37949
Morgenstern B, Frech K, Dress A, Werner T "DIALIGN: finding local similarities by multiple sequence alignment." Bioinformatics. 1998;14(3):290-4. https://doi.org/10.1093/bioinformatics/14.3.290
PMID: 9614273
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