MSAViewer

The MSAViewer is an open-source JavaScript component used for visualizing and analyzing Multiple Sequence Alignment (MSA) data, regardless of size. It includes interactive navigation, color schemes, sorting, selecting, and filtering features, and does not require any specialized software or web browser.

Topic

Sequence analysis;Sequence sites, features and motifs;Bioinformatics;Phylogenetics;Sequencing

Detail

  • Operation: Sequence visualisation;Multiple sequence alignment

  • Software interface: Command-line user interface;library;web user interface

  • Language: Javascript

  • License: Boost Software License 1.0

  • Cost: Free

  • Version name: -

  • Credit: The German Federal Ministry for Education and Research (BMBF), Ernst Ludwig Ehrlich Studienwerk, the Google Summer of Code program.

  • Input: FASTA

  • Output: -

  • Contact: https://gitter.im/wilzbach/msa, msa@bio.sh

  • Collection: BioJS

  • Maturity: Stable

Publications

  • MSAViewer: interactive JavaScript visualization of multiple sequence alignments.
  • Yachdav G, et al. MSAViewer: interactive JavaScript visualization of multiple sequence alignments. MSAViewer: interactive JavaScript visualization of multiple sequence alignments. 2016; 32:3501-3503. doi: 10.1093/bioinformatics/btw474
  • https://doi.org/10.1093/bioinformatics/btw474
  • PMID: 27412096
  • PMC: PMC5181560

Download and documentation

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