PPIXpress

PPIXpress is a tool for constructing protein interaction networks based on transcript expression. The PPIXpress algorithm combines individual protein and domain interactions and deduces the condition-specific interactions from the dominant protein isoforms.

Topic

Systems biology;Molecular interactions, pathways and networks;RNA splicing

Detail

  • Operation: Pathway or network prediction

  • Software interface: Graphical user interface

  • Language: Java

  • License: GNU General Public License v 3.0

  • Cost: Free

  • Version name: 1.23

  • Credit: DFG via SFB 1027.

  • Input: -

  • Output: -

  • Contact: Volkhard Helms volkhard.helms@bioinformatik.uni-saarland.de

  • Collection: -

  • Maturity: -

Publications

  • PPIXpress: construction of condition-specific protein interaction networks based on transcript expression.
  • Will T, Helms V. PPIXpress: construction of condition-specific protein interaction networks based on transcript expression. Bioinformatics. 2016 Feb 15;32(4):571-8. doi: 10.1093/bioinformatics/btv620. Epub 2015 Oct 27. PMID: 26508756.
  • https://doi.org/10.1093/bioinformatics/btv620
  • PMID: 26508756
  • PMC: -

Download and documentation

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