PSI-Coffee
PSI-Coffee is a part of the T-Coffe distribution and specifically designed for making multiple sequence alignments (MSAs) of alpha-helical transmembrane protein sequences. The Authors claim PSI-Coffee to be more accurate than MSAProbs, Kalign, PROMALS, MAFFT, ProbCons, and PRALINE.
Topic
Phylogeny;Sequence analysis;Nucleic acid sites, features and motifs;Nucleic acid structure analysis;Sequence sites, features and motifs
Detail
Operation: Multiple sequence alignment
Software interface: Command-line user interface;web user interface
Language: C++
License: GNU GLP v3
Cost: Free
Version name: 12
Credit: Swiss National Science Foundation
Input: FASTA
Output: clustalw;MSF;PIR;FASTA;PHYLIP;ASCII;HTML;PDF;PS
Contact: cedric.notredame@europe.com
Collection: T-Coffee
Maturity: Mature
Publications
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Download and documentation
Source: https://github.com/cbcrg/tcoffee
Documentation: http://www.tcoffee.org/Projects/tcoffee/index.html#DOCUMENTATION
Home page: http://www.tcoffee.org/
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