SCANPY

SCANPY is a Python library to analyze single-cell RNA-seq data. The SCANPY package has functions for preprocessing, clustering, differential expression testing, pseudo-time and trajectory inference, gene regulatory networks simulation, and visualization,

Topic

Gene expression;Cell biology;Genetics

Detail

  • Operation: Differential gene expression analysis

  • Software interface: Library

  • Language: Python

  • License: BSD 3-Clause "New" or "Revised" License

  • Cost: Free

  • Version name: 1.4

  • Credit: The Helmholtz Postdoc Programme, Initiative and Networking Fund of the Helmholtz Association, the German Research Foundation (DFG).

  • Input: -

  • Output: -

  • Contact: Wolf FA alex.wolf@helmholtz-muenchen.de

  • Collection: -

  • Maturity: -

Publications

  • SCANPY: large-scale single-cell gene expression data analysis.
  • Wolf FA, et al. SCANPY: large-scale single-cell gene expression data analysis. SCANPY: large-scale single-cell gene expression data analysis. 2018; 19:15. doi: 10.1186/s13059-017-1382-0
  • https://doi.org/10.1186/s13059-017-1382-0
  • PMID: 29409532
  • PMC: PMC5802054

Download and documentation

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