cddApp

cddApp is a Cytoscape3 extension used for annotation of protein networks by retrieving and integrating data from the National Center for Biotechnology Information (NCBI) Conserved Domain Database (CDD). cddApp integrates with structureViz2.

Topic

Systems biology;Biotechnology;Sequence sites, features and motifs;Molecular interactions, pathways and networks

Detail

  • Operation: Annotation

  • Software interface: Graphical user interface

  • Language: Java

  • License: -

  • Cost: Free

  • Version name: 1.1.4

  • Credit: Intramural Research Program of the U.S. National Institutes of Health (NIH), National Library of Medicine, NIH National Institute of General Medical Science Grant.

  • Input: -

  • Output: -

  • Contact: John H. Morris scooter@cgl.ucsf.edu

  • Collection: -

  • Maturity: Stable

Publications

  • cddApp: a Cytoscape app for accessing the NCBI conserved domain database.
  • Morris JH, Wu A, Yamashita RA, Marchler-Bauer A, Ferrin TE. cddApp: a Cytoscape app for accessing the NCBI conserved domain database. Bioinformatics. 2015 Jan 1;31(1):134-6. doi: 10.1093/bioinformatics/btu605. Epub 2014 Sep 10. PMID: 25212755; PMCID: PMC4271147.
  • https://doi.org/10.1093/bioinformatics/btu605
  • PMID: 25212755
  • PMC: PMC4271147

Download and documentation

< Back to DB search