TREEasy

TREEasy is a workflow tool to deduce gene and species trees and phylogenetic networks using multilocus data. The TREEasy workflow uses MAFFT, IQ-Tree, RaxML-NG, ASTRAL, MP-EST, STELLS2, SNaQ, and PhyloNet tools.

Topic

Phylogenetics;Phylogenomics;Workflows;Cladistics;Model organisms

Detail

  • Operation: Phylogenetic reconstruction;Species tree construction;Phylogenetic footprinting;Phylogenetic tree editing;Formatting

  • Software interface: Command-line user interface, graphical user interface

  • Language: Python, Perl

  • License: GNU General Public Licence v3

  • Cost: Free

  • Version name: -

  • Credit: Okinawa Institute of Science and Technology Graduate University (OIST), funded by Japan Society for the Promotion of Science (JSPS).

  • Input: FASTA

  • Output: -

  • Contact: Yafei Mao yafmao at uw.edu

  • Collection: --

  • Maturity: -

Publications

  • TREEasy: An automated workflow to infer gene trees, species trees, and phylogenetic networks from multilocus data.
  • Mao Y, Hou S, Shi J, Economo EP (2020). TREEasy: An automated workflow to infer gene trees, species trees, and phylogenetic networks from multilocus data. Mol Ecol Resour 20(3).
  • https://doi.org/10.1111/1755-0998.13149
  • PMID: 32073732
  • PMC: -

Download and documentation

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