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Repbase

Repbase

Repbase is a web-based database consisting of eukaryotic transposable elements (TEs) and repeat sequence elements. Some sections of the service require registration.

Topic

Sequence analysis; Sequence composition, complexity and repeats

Details

  • Operation: Data retrieval
  • Software interface: Web user interface
  • Language: 1
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Partly free
  • Version name: -
  • Maturity: Mature
  • Credit: The Ministry of Science and Technology, Taiwan
  • Contact: kojima _at_ girinst.org | kojimakk _at_ mail.ncku.edu.tw | webmaster _at_ girinst.org
  • Collection: -

Publications

Kojima KK "Human transposable elements in Repbase: genomic footprints from fish to humans." Mob DNA, 2018 https://doi.org/10.1186/s13100-017-0107-y
PMID: 29308093
PMCID: PMC5753468


Jurka J "Repbase update: a database and an electronic journal of repetitive elements." Trends Genet, 2000 https://doi.org/10.1016/s0168-9525(00)02093-x
PMID: 10973072
PMCID: None


Kapitonov VV, Jurka J "A universal classification of eukaryotic transposable elements implemented in Repbase." Nat Rev Genet, 2008 https://doi.org/10.1038/nrg2165-c1
PMID: 18421312
PMCID: None


Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J "Repbase Update, a database of eukaryotic repetitive elements." Cytogenet Genome Res, 2005 https://doi.org/10.1159/000084979
PMID: 16093699
PMCID: None


Kohany O, Gentles AJ, Hankus L, Jurka J "Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor." BMC Bioinformatics, 2006 https://doi.org/10.1186/1471-2105-7-474
PMID: 17064419
PMCID: PMC1634758


Bao W, Kojima KK, Kohany O "Repbase Update, a database of repetitive elements in eukaryotic genomes." Mob DNA, 2015 https://doi.org/10.1186/s13100-015-0041-9
PMID: 26045719
PMCID: PMC4455052


Kojima KK "Structural and sequence diversity of eukaryotic transposable elements." Genes Genet Syst, 2020 https://doi.org/10.1266/ggs.18-00024
PMID: 30416149
PMCID: None


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