Repbase is a web-based database consisting of eukaryotic transposable elements (TEs) and repeat sequence elements. Some sections of the service require registration.
Sequence analysis; Sequence composition, complexity and repeats
Kojima KK "Human transposable elements in Repbase: genomic footprints from fish to humans." Mob DNA, 2018 https://doi.org/10.1186/s13100-017-0107-y
PMID: 29308093
PMCID: PMC5753468
Jurka J "Repbase update: a database and an electronic journal of repetitive elements." Trends Genet, 2000 https://doi.org/10.1016/s0168-9525(00)02093-x
PMID: 10973072
PMCID: None
Kapitonov VV, Jurka J "A universal classification of eukaryotic transposable elements implemented in Repbase." Nat Rev Genet, 2008 https://doi.org/10.1038/nrg2165-c1
PMID: 18421312
PMCID: None
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J "Repbase Update, a database of eukaryotic repetitive elements." Cytogenet Genome Res, 2005 https://doi.org/10.1159/000084979
PMID: 16093699
PMCID: None
Kohany O, Gentles AJ, Hankus L, Jurka J "Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor." BMC Bioinformatics, 2006 https://doi.org/10.1186/1471-2105-7-474
PMID: 17064419
PMCID: PMC1634758
Bao W, Kojima KK, Kohany O "Repbase Update, a database of repetitive elements in eukaryotic genomes." Mob DNA, 2015 https://doi.org/10.1186/s13100-015-0041-9
PMID: 26045719
PMCID: PMC4455052
Kojima KK "Structural and sequence diversity of eukaryotic transposable elements." Genes Genet Syst, 2020 https://doi.org/10.1266/ggs.18-00024
PMID: 30416149
PMCID: None
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