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STRScan

STRScan is a tool to profile short tandem repeats (STRs) in high-throughput sequencing data sets and is useful for human identity testing.

Topic

Sequence analysis; Whole genome sequencing

Details

Operation: Repeat sequence detection
Software interface: Command-line user interface
Language: C; Python
Operating system: Linux
License: Not stated

Cost

Version name: -

Credit: National Science Foundation
Contact: hatang _at_ indiana.edu
Collection: -

Publications

Tang H, Nzabarushimana E "STRScan: targeted profiling of short tandem repeats in whole-genome sequencing data." BMC Bioinformatics 2017; 18(Suppl 11):398 https://doi.org/10.1186/s12859-017-1800-z
PMID: 28984185
PMCID: PMC5629557

Download and documentation

Source: http://darwin.informatics.indiana.edu/st
r/STRScan/STRScan.tar.gz
Home page: http://darwin.informatics.indiana.edu/st
r/
Data: http://darwin.informatics.indiana.edu/st
r/detectedstrs.html

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