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ACNE
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ACNE

ACNE is a tool to estimate allele-specific copy numbers (CNs) in Affymetrix SNP array data. The ACNE algorithm uses the cross hybridization probe data. ACNE is a part of the Aroma project. See links below.



ACNE

ACNE is a tool to estimate allele-specific copy numbers (CNs) in Affymetrix SNP array data. The ACNE algorithm uses the cross hybridization probe data. ACNE is a part of the Aroma project. See links below.

Topic

Genetics; genetic variation

Details

  • Operation: Variation detection
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: GNU Lesser General Public License v2.1
    • Cost: Free
  • Version name: 3.2.0
    • Maturity: Stable
  • Credit: University of Navarra, Fundación para la Investigación Médica Aplicada.
  • Contact: arubio _at_ tecnun.es
  • Collection: Aroma

Publications

Ortiz-Estevez M, Bengtsson H, Rubio A "ACNE: a summarization method to estimate allele-specific copy numbers for Affymetrix SNP arrays." Bioinformatics. 2010 Aug 1;26(15):1827-33. Epub 2010 Jun 6. https://doi.org/10.1093/bioinformatics/btq300
PMID: 20529889
PMCID: PMC2913655


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