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FACETS is an analysis pipeline for analysis of allele-specific copy number for whole-genome and targeted sequencing data.


Public health and epidemiology; Human genetics; Oncology


  • Operation: Genetic variation analysis
  • Software interface: Command-line user interface
  • Language: R;Perl
  • Operating system: Linux; Microsoft Windows
  • License: Other
  • Cost: Free
  • Version name: 0.5.0
  • Credit: National Cancer Institute, the Cure foundation, Memorial Sloan Kettering Cancer Center.
  • Contact: seshanv _at_
  • Collection: -


Shen R, Seshan VE "FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing." Nucleic Acids Res. 2016 Sep 19;44(16):e131. Epub 2016 Jun 7.
PMID: 27270079
PMCID: PMC5027494

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