SMURF-seq

SMURF-seq is a collection of R and Python scripts for sequencing short reads for copy number variation (CNV) profiling.

Topic

Genetics; Sequencing; Genetic variation

Cost

Credit: Breast Cancer Research Foundation (BCRF), the National Intitutes of Health (NIH).
Contact: Andrew D. Smith andrewds _at_ usc.edu | Rishvanth K. Prabakar kaliappa _at_ usc.edu
Collection: -

Prabakar RK, Xu L, Hicks J, Smith AD "SMURF-seq: efficient copy number profiling on long-read sequencers." Genome Biol. 2019 Jul 8;20(1):134. https://doi.org/10.1186/s13059-019-1732-1
PMID: 31287019
PMCID: PMC6615205

Source: https://github.com/smithlabcode/smurfseq
_scripts
Documentation: https://github.com/smithlabcode/smurfseq
_scripts/blob/master/README.md
Home page: https://github.com/smithlabcode/smurfseq
_scripts
Data: https://github.com/smithlabcode/smurfseq
_scripts/tree/master/data

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