modSaRa2 is an R package to identify copy number variable (CNV) segments in genomic data. modSaRa2 is an improved version of modSaRa by the integration of relative allelic intensity data to reduce noise.
Genetics; nucleic acid structure analysis
Xiao F, Luo X, Hao N, Niu YS, Xiao X, Cai G, Amos CI, Zhang H "An accurate and powerful method for copy number variation detection" Bioinformatics. 2019 Jan 14 https://doi.org/10.1093/bioinformatics/bty1041
PMID: 30649252
Xiao F, Niu Y, Hao N, Xu Y, Jin Z, Zhang H "modSaRa: a computationally efficient R package for CNV identification." Bioinformatics. 2017 Aug 1;33(15):2384-2385. https://doi.org/10.1093/bioinformatics/btx212
PMID: 28453611
PMCID: PMC5860124
Niu YS, Zhang H "THE SCREENING AND RANKING ALGORITHM TO DETECT DNA COPY NUMBER VARIATIONS." Ann Appl Stat. 2012 Sep;6(3):1306-1326. https://doi.org/10.1214/12-AOAS539SUPP
PMID: 24069112
PMCID: PMC3779928
Hao N, Niu YS, Zhang H "Multiple Change-Point Detection via a Screening and Ranking Algorithm." Stat Sin. 2013 Jul 1;23(4):1553-1572. https://doi.org/10.5705/ss.2012.018s
PMID: 24489450
PMCID: PMC3902887
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