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4Pipe4
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4Pipe4

A pipeline tool for analysis and detection of single nucleotide polymorphism (SNP) in 454 EST sequencing data.



4Pipe4

A pipeline tool for analysis and detection of single nucleotide polymorphism (SNP) in 454 EST sequencing data.

Topic

Genetics; Sequence analysis; DNA polymorphism

Details

  • Operation: SNP detection
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v3
    • Cost: Free
  • Version name: -
    • Maturity: Legacy
  • Credit: SOBREIRO/0036/2009 (the framework of the Cork Oak ESTs Consortium), Fundação para a Ciência e Tecnologia (FCT), Portugal
  • Contact: Francisco Pina-Martins f.pinamartins _at_ gmail.com
  • Collection: -

Publications

Pina-Martins F, Vieira BM, Seabra SG, Batista D, Paulo OS "4Pipe4--A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information." BMC Bioinformatics. 2016 Jan 19;17:41. https://doi.org/10.1186/s12859-016-0892-1
PMID: 26787189
PMCID: PMC4719533


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