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Atlas-SNP2

Atlas-SNP2

A SNP discovery method to assess variant allele probability.

Topic

DNA polymorphism

Details

  • Operation: SNP detection
  • Software interface: Command-line interface
  • Language: Ruby, C++
  • Operating system: Linux
  • License: Other
  • Cost: Free
  • Version name: 1.4.3
  • Maturity: Mature
  • Credit: Shen Y, Wan Z, Coarfa C, Drabek R, Chen L, Ostrowski EA, Liu Y, Weinstock GM, Wheeler DA, Gibbs RA, Yu F.
  • Contact: Fuli Yu fyu at bcm.edu
  • Collection: -

Publications

Shen Y, Wan Z, Coarfa C, Drabek R, Chen L, Ostrowski EA, Liu Y, Weinstock GM, Wheeler DA, Gibbs RA, Yu F "A SNP discovery method to assess variant allele probability from next-generation resequencing data." Genome Res. 2010; 20(2):273-80 https://doi.org/10.1101/gr.096388.109
PMID: 20019143
PMCID: PMC2813483


Download and documentation




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