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Coval

Coval

Short read alignment with filtering and error correction of mismatched reads for accurate identification of DNA polymorphism.

Topic

Biology, Genetics, Molecular genetics, Genetic variation, DNA polymorphism

Details

  • Operation: Filtering, short read alignment, Read alignment
  • Software interface: Command-line interface
  • Language: Perl
  • Operating system: Linux, Mac OS X
  • License: Not stated
  • Cost: Free
  • Version name: 1.4.1, 1.5
  • Credit: Kosugi S, Natsume S, Yoshida K, MacLean D, Cano L, Kamoun S, Terauchi R.
  • Contact: Shunichi Kosugi skosugi at kazusa.or.jp
  • Collection: -

Publications

Kosugi S, Natsume S, Yoshida K, MacLean D, Cano L, Kamoun S, Terauchi R "Coval: improving alignment quality and variant calling accuracy for next-generation sequencing data." PLoS ONE 2013; 8(10):e75402 https://doi.org/10.1371/journal.pone.0075402
PMID: 24116042
PMCID: PMC3792961


Download and documentation




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