Performs in silico genotyping for selected loci, e.g., single nucleotid polymorphism and drug resistance.
Microbiology, Genomics, Sequence assembly, Mapping
Steiner A, Stucki D, Coscolla M, Borrell S, Gagneux S "KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes." BMC Genomics 2014 https://doi.org/10.1186/1471-2164-15-881
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