KvarQ

Performs in silico genotyping for selected loci, e.g., single nucleotid polymorphism and drug resistance.

Topic

Microbiology, Genomics, Sequence assembly, Mapping

Cost

Steiner A, Stucki D, Coscolla M, Borrell S, Gagneux S "KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes." BMC Genomics 2014 https://doi.org/10.1186/1471-2164-15-881
PMID: 25297886
PMCID: PMC4197298

Source: https://github.com/kvarq/kvarq
Documentation: http://kvarq.readthedocs.org/
Home page: https://www.swisstph.ch/en/about/mpi/tub
erculosis-research/kvarq-targeted-an
d-direct-variant-calling-in-fastq-reads-of-bacterial-genomes/

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