For better experience, turn on JavaScript!


Mapsnp

Mapsnp

The tool uses the biomaRt and the rtracklayer packages to annotate queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. mapsnp package inherits from the Gviz package.

Topic

Genetics, Molecular genetics, Genetic variation

Details

  • Operation: Visualization, Query and retrieval
  • Software interface: Command-line interface
  • Language: R
  • Operating system: Linux, Microsoft Windows, Mac OS X
  • License: Artistic-2.0
  • Cost: -
  • Version name: 1.26.5
  • Credit: Zhang F, Xu Y, Cao H, Jin C, Cheng Z, Wang G, Shugart YY.
  • Contact: robert.ivanek at unibas.ch
  • Collection: -

Publications

Zhang F, Xu Y, Cao H, Jin C, Cheng Z, Wang G, Shugart YY "Mapsnp: an R package to plot a genomic map for single nucleotide polymorphisms." PLoS ONE 2015; 10(4):e0123609 https://doi.org/10.1371/journal.pone.0123609
PMID: 25853637
PMCID: PMC4390227


Download and documentation




You may also like:



If you find errors, please report here.