PoolHap

A tool for inferring haplotype frequencies from pooled samples.

Topic

Genetics, Statistics and probability

Details

Operation: Statistical inference, Haplotype mapping
Software interface: Command-line interface
Language: Java
Operating system: Linux, Microsoft Windows, Mac OS X
License: Not stated

Cost

Version name: -

Maturity:

Credit: Long Q, Jeffares DC, Zhang Q, Ye K, Nizhynska V, Ning Z, Tyler-Smith C, Nordborg M.
Contact: Quan Long quan.long at gmi.oeaw.ac.at
Collection: -

Publications

Long Q, Jeffares DC, Zhang Q, Ye K, Nizhynska V, Ning Z, Tyler-Smith C, Nordborg M "PoolHap: inferring haplotype frequencies from pooled samples by next generation sequencing." PLoS ONE 2011; 6(1):e15292 https://doi.org/10.1371/journal.pone.0015292
PMID: 21264334
PMCID: PMC3016441

Download and documentation

Source: https://github.com/Gregor-Mendel-Institu
te/poolhap
Documentation: https://github.com/Gregor-Mendel-Institu
te/poolhap/blob/master/UsersManual4P
oolHap.pdf
Home page: http://arabidopsis.gmi.oeaw.ac.at/quan/p
oolhap/

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PoolHap

PoolHap

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