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PyroHMMsnp

A tool for single nucleotide polymorphism (SNP) calling for 454 and Ion Torrent data.

Topic

Biology, Genetics, DNA polymorphism

Details

Operation: Genetic variation analysis, SNP calling
Software interface: Command-line interface
Language: C++
Operating system: Linux
License: Not stated

Cost

Version name: 1.1

Maturity:

Credit: Zeng F, Jiang R, Chen T.
Contact: Ting Chen tingchen at usc.edu, Rui Jiang ruijiang at stsinghua.edu.cn
Collection: -

Publications

Zeng F, Jiang R, Chen T "PyroHMMsnp: an SNP caller for Ion Torrent and 454 sequencing data." Nucleic Acids Res. 2013; 41(13):e136 https://doi.org/10.1093/nar/gkt372
PMID: 23700313
PMCID: PMC3711422

Download and documentation

Source: https://code.google.com/archive/p/pyrohm
msnp/downloads
Documentation: https://code.google.com/archive/p/pyrohm
msnp/
Home page: https://code.google.com/archive/p/pyrohm
msnp/

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