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SNIT

SNIT

A pipeline to identify microbial strains.

Topic

Biology, Genetics, DNA polymorphism

Details

  • Operation: Sequence classification
  • Software interface: Command-line interface, desktop graphical user interface
  • Language: Java, Perl
  • Operating system: Linux
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: Vijaya Satya R, Zavaljevski N, Reifman J.
  • Contact: Jaques Reifman jaques.reifman at us.army.mil
  • Collection: -

Publications

Vijaya Satya R, Zavaljevski N, Reifman J "SNIT: SNP identification for strain typing." Source Code Biol Med 2011 https://doi.org/10.1186/1751-0473-6-14
PMID: 21902825
PMCID: PMC3182885


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