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SNP-sites

SNP-sites

Rapid efficient extraction of SNPs from multi-FASTA alignments.

Topic

Computational biology, Genetic variation

Details

  • Operation: Analysis, Sequence analysis, Nucleic acid sequence analysis, Nucleic acid feature detection, Genetic variation analysis, Polymorphism detection, SNP detection
  • Software interface: Command-line interface
  • Language: C
  • Operating system: OSX/Linux
  • License: GNU AGPL v3
  • Cost: -
  • Version name: -
  • Credit: Page AJ, Taylor B, Delaney AJ, Soares J, Seemann T, Keane JA,Harris SR
  • Contact: -
  • Collection: -

Publications

Page AJ, Taylor B, Delaney AJ, Soares J, Seemann T, Keane JA, Harris SR "SNP-sites: Rapid Efficient Extraction of SNPs From multi-FASTA Alignments" Microb Genom 2016; 2(4):e000056 https://doi.org/10.1099/mgen.0.000056
PMID: 28348851
PMCID: PMC5320690


Download and documentation




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