SNP-sites

Rapid efficient extraction of SNPs from multi-FASTA alignments.

Topic

Computational biology, Genetic variation

Details

Operation: Analysis, Sequence analysis, Nucleic acid sequence analysis, Nucleic acid feature detection, Genetic variation analysis, Polymorphism detection, SNP detection
Software interface: Command-line interface
Language: C
Operating system: OSX/Linux
License: GNU AGPL v3

Cost

Version name: -

Credit: Page AJ, Taylor B, Delaney AJ, Soares J, Seemann T, Keane JA,Harris SR
Contact: -
Collection: -

Publications

Page AJ, Taylor B, Delaney AJ, Soares J, Seemann T, Keane JA, Harris SR "SNP-sites: Rapid Efficient Extraction of SNPs From multi-FASTA Alignments" Microb Genom 2016; 2(4):e000056 https://doi.org/10.1099/mgen.0.000056
PMID: 28348851
PMCID: PMC5320690

Download and documentation

Source: https://github.com/sanger-pathogens/snp-
sites
Documentation: https://github.com/sanger-pathogens/snp-
sites
Home page: https://www.sanger.ac.uk/science/tools/s
np-sites

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SNP-sites

SNP-sites

Topic

Details

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Download and documentation

TOOLS

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