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SNPchiMp v.3

SNPchiMp v.3

A web-based tool that allows researchers to browse between various SNP chips and types of information in many species, such as list SNPs that are contained in commercial SNP chips, chromosome and physical position of your SNPs, make commercial SNP/probe names linked to a [rs/ss]IDs, access to sender original information, including orientation, strand, etc., access to Illumina’s FORWARD/REVERSE or TOP/BOT allele coding customized to the desired SNP chip(s), Obtain the latest version of the Interbull SNP exchange index, interact with Ensembl BioMart and Variant Effect Predictor (VeP) tools directly, and Access the open-source (or open-access for third parties) tools for basic SNP data management.

Topic

Biology, Genetics,

Details

  • Operation: Query and retrieval
  • Software interface: Database
  • Language: -
  • License: Not stated
  • Cost: Free
  • Version name: 3.0
  • Credit: Nicolazzi EL, Caprera A, Nazzicari N, Cozzi P, Strozzi F, Lawley C, Pirani A, Soans C, Brew F, Jorjani H, Evans G, Simpson B, Tosser-Klopp G, Brauning R, Williams JL, Stella A.
  • Contact: http://bioinformatics.tecnoparco.org/SNPchimp/index.php/contacts
  • Collection: -

Publications

Nicolazzi EL, Caprera A, Nazzicari N, Cozzi P, Strozzi F, Lawley C, Pirani A, Soans C, Brew F, Jorjani H, Evans G, Simpson B, Tosser-Klopp G, Brauning R, Williams JL, Stella A "SNPchiMp v.3: integrating and standardizing single nucleotide polymorphism data for livestock species." BMC Genomics 2015 https://doi.org/10.1186/s12864-015-1497-1
PMID: 25881165
PMCID: PMC4399246


Nicolazzi EL, Picciolini M, Strozzi F, Schnabel RD, Lawley C, Pirani A, Brew F, Stella A "SNPchiMp: a database to disentangle the SNPchip jungle in bovine livestock." BMC Genomics 2014 https://doi.org/10.1186/1471-2164-15-123
PMID: 24517501
PMCID: PMC3923093


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