SNiPloid

A tool to discover and validate predicted single nucleotide polymorphisms (SNPs), optimized for allopolyploid species.

Topic

Biology, Genetics, DNA polymorphism

Details

Operation: SNP calling
Software interface: Web user interface
Language: Perl
License: "CeCILL public license", a free software license.

Cost

Version name: 3

Credit: Peralta M, Combes MC, Cenci A, Lashermes P, Dereeper A.
Contact: -
Collection: -

Publications

Peralta M, Combes MC, Cenci A, Lashermes P, Dereeper A "SNiPloid: A Utility to Exploit High-Throughput SNP Data Derived from RNA-Seq in Allopolyploid Species." Int J Plant Genomics 2013 https://doi.org/10.1155/2013/890123
PMID: 24163691
PMCID: PMC3791807

Download and documentation

Source: http://sniplay.southgreen.fr/data/SNiPlo
id/SNiPloid.tar.gz
Documentation: http://sniplay.southgreen.fr/cgi-bin/doc
umentation_v3.cgi
Home page: http://sniplay.southgreen.fr/cgi-bin/sni
ploid.cgi

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SNiPloid

SNiPloid

Topic

Details

Publications

Download and documentation

TOOLS

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