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SparSNP

A fast and memory-efficient analysis of all SNPs for phenotype prediction. It also does cross-validation.

Topic

Biology, Genetics, DNA polymorphism

Details

Operation: Modelling and simulation, Validation
Software interface: Command-line interface
Language: C
Operating system: Linux, Mac OS X
License: GNU GPL v3

Cost

Version name: -

Credit: Abraham G, Kowalczyk A, Zobel J, Inouye M.
Contact: gad.abraham at unimelb.edu.au
Collection: -

Publications

Abraham G, Kowalczyk A, Zobel J, Inouye M "SparSNP: fast and memory-efficient analysis of all SNPs for phenotype prediction." BMC Bioinformatics 2012 https://doi.org/10.1186/1471-2105-13-88
PMID: 22574887
PMCID: PMC3483007

Download and documentation

Source: https://github.com/gabraham/SparSNP
Home page: https://github.com/gabraham/SparSNP

If you find errors, please report here.

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