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VarScan

VarScan

A tool to detect sequence variants using heuristics / statistics accoring to set thresholds.

Topic

Sequencing, DNA polymorphism

Details

  • Operation: Varian calling
  • Software interface: Command-line interface
  • Language: Java
  • Operating system: Linux, Microsoft Windows, Mac OS X
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: Koboldt DC, Chen K, Wylie T, Larson DE, McLellan MD, Mardis ER, Weinstock GM, Wilson RK, Ding L.
  • Contact: https://sourceforge.net/p/varscan/discussion/1073559
  • Collection: -

Publications

Koboldt DC, Chen K, Wylie T, Larson DE, McLellan MD, Mardis ER, Weinstock GM, Wilson RK, Ding L "VarScan: variant detection in massively parallel sequencing of individual and pooled samples." Bioinformatics 2009; 25(17):2283-5 https://doi.org/10.1093/bioinformatics/btp373
PMID: 19542151
PMCID: PMC2734323


Download and documentation




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