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WEP

WEP

Whole-Exome sequencing Pipeline web tool comprising tthe following steps: (1) Read timming, quality checks, filtering, (2) Gapped sequence alignment, (3) BAM conversion, (4), Dublicate removal, (5) Deletion of other artifacts, (6) Calibration of quality scores, (7) SNV and DIP calling, (8) Annotation association, (9) Post processing of data.

Topic

Seqencing

Details

  • Operation: equence analysis, Nucleic acid features
  • Software interface: Web user interface
  • Language: -
  • License: Not stated
  • Cost: -
  • Version name: -
  • Credit: D'Antonio M, D'Onorio De Meo P, Paoletti D, Elmi B, Pallocca M, Sanna N, Picardi E, Pesole G, Castrignan√≤ T.
  • Contact: Tiziana Castrignan√≤ t.castrignano at cineca.it
  • Collection: -

Publications

D'Antonio M, D'Onorio De Meo P, Paoletti D, Elmi B, Pallocca M, Sanna N, Picardi E, Pesole G, Castrignanò T "WEP: a high-performance analysis pipeline for whole-exome data." BMC Bioinformatics 2013 https://doi.org/10.1186/1471-2105-14-S7-S11
PMID: 23815231
PMCID: PMC3633005


Download and documentation

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