Whole-Exome sequencing Pipeline web tool comprising tthe following steps: (1) Read timming, quality checks, filtering, (2) Gapped sequence alignment, (3) BAM conversion, (4), Dublicate removal, (5) Deletion of other artifacts, (6) Calibration of quality scores, (7) SNV and DIP calling, (8) Annotation association, (9) Post processing of data.
Seqencing
D'Antonio M, D'Onorio De Meo P, Paoletti D, Elmi B, Pallocca M, Sanna N, Picardi E, Pesole G, Castrignanò T "WEP: a high-performance analysis pipeline for whole-exome data." BMC Bioinformatics 2013 https://doi.org/10.1186/1471-2105-14-S7-S11
PMID: 23815231
PMCID: PMC3633005
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