mrsFAST-Ultra

A single nucleotide polymorphism (SNP) aware short read mapper.

Topic

Genomics

Details

Operation: Read mapping, Mapping
Software interface: Command-line interface
Language: C
Operating system: Linux
License: BSD 3-Clause "New" or "Revised" License

Cost

Version name: 3.3.0

Credit: Hach F, Sarrafi I, Hormozdiari F, Alkan C, Eichler EE, Sahinalp SC.
Contact: Iman Sarrafi https://github.com/isarrafi/, Faraz Hach https://github.com/fhach
Collection: -

Publications

Hach F, Sarrafi I, Hormozdiari F, Alkan C, Eichler EE, Sahinalp SC "mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications." Nucleic Acids Res. 2014; 42(Web Server issue):W494-500 https://doi.org/10.1093/nar/gku370
PMID: 24810850
PMCID: PMC4086126

Download and documentation

Source: https://github.com/sfu-compbio/mrsfast
Documentation: https://github.com/sfu-compbio/mrsfast
Home page: https://github.com/sfu-compbio/mrsfast

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mrsFAST-Ultra

mrsFAST-Ultra

Topic

Details

Publications

Download and documentation

TOOLS

1. SNP Tools

2. GWAS Tools

3. Genotype Imputation Tools

4. MSA tools

5. CNV tools

6. WGA tools

7. RNA-seq tools

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9. Nucleic Acid Structure Analysis Tools

10. Nucleic Acid Sequence Analysis Tools

11. Sequence Logo Tools

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