GAPIT (Genome Association and Prediction Integrated Tool) is a tool for genome-wide association study (GWAS) and for genome prediction or selection. The GAPIT algorithm uses The Mixed Linear Model (MLM).
GWAS study
Lipka AE, Tian F, Wang Q, Peiffer J, Li M, Bradbury PJ, Gore MA, Buckler ES, Zhang Z "GAPIT: Genome Association and Prediction Integrated Tool" Bioinformatics. 2012 Sep 15;28(18):2397-9 https://doi.org/10.1093/bioinformatics/bts444
PMID: 22796960
Tang Y, Liu X, Wang J, Li M, Wang Q, Tian F, Su Z, Pan Y, Liu D, Lipka AE, Buckler ES, Zhang Z "GAPIT Version 2: An Enhanced Integrated Tool for Genomic Association and Prediction" Plant Genome. 2016 Jul;9(2) https://doi.org/10.3835/plantgenome2015.11.0120
PMID: 27898829
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